In this paper, a computer program for simulation of 4 cycle diesel engines including intake and exhaust manifold system is developed. The wave action theory is applied for optimization of the intake and exhaust manifold system. The calculation results of this computer program is finely accurate and agreed well with experimental results. Accordingly, it is recognized that the developed computer program can be utillized very usefully for the design of intake and manifold system. And then, influential factors of the engine performance in the design of intake manifold is numerically investigated by the calculation only. As the results it is concluded that the inertia one of the dynamic effects on the intake and exhaust maninfold affects mainly the engine performance and the pulsation one is a side effect.