This paper describes dynamic simulation of the spent fuel storage system which is described by statistical discrete event models. It visualizes flow and queue of system over time, assesses the operational performance of the system acitivies and establishes the system components and streams. It gives information on system organization and operation policy with reference to the design. System was tested and analyzed over a number of critical parameters to establish the optimal system. Workforce schedule and resources with long processing time dominate process. A combination of two workforce shifts a day and two cooling pits gives the optimal solution of storage system. Discrete system simulation is an useful tool to get information on optimal design and operation of the storage system.