A robust controller is proposed to design a flight autopilot for lateral motion control. The control system has two control loops in order to meet the performance and to maintain the stability-robustness for a nonsquare flight system with uncertain aerodynamic variations and disturbance. One is designed via linear quadratic Gaussian with loop transfer recovery(LQG/LTR) design methodology for the inner loop. The other is designed via proportional controller design method for the outer loop. To show the effectiveness of this control system, it is compared with the LQG/LTR control system for a square flight system and is analyzed for the performance/stability-robustness to model uncertainties and disturbance via wind gusts. It is found that the proposed control system has good heading command-following performance under allowable sideslip angle in spite of model uncertainties and disturbance.