When the input-output record is available, the identification of a bilinear system is considered. It is assumed that the input is noise free and the output is contaminated by an additive noise. It is further assumed that the covariance matrix of the noise is known up to a factor of proportionality. The extended generalized total least squares (e-GTLS) method is proposed as one of the consistent estimators of the bilinear system parameters. Considering that the input is noise-free and that bilinear system equation is linear with respect to the system parameters, we extend the GTLS problem. The extended GTLS problem is reduced to an unconstrained minimization problem, and is solved by the Newton-Raphson method. We compare the GTLS method and the e-GTLS method in the point of the accuracy of the estimated system parameters.