In this paper, we construct a navigation geography database using R-tree, and develop a software for avionics systems such as VOR, ILS, DME, and NDB. First, we design the navigation geography database using R-tree, and construct a database for navigation aids facilities of every airport. In order to implement avionics software, we develop some calculating algorithms for distance, bearing, and deviation angle between an aircraft and a VOR station for VOR, and deviation angle from a LLZ, glide slope from a GP, and range of markers for ILS. The navigation geography database system is composed of map data manager which can construct and update the database, real-time searcher which provides information about the avionics system, geography database, and user interface.