The $CO_2$ measuring system using infrared sensor has the variance according to the temperature change. Therefore, the temperature compensation should be needed to obtain a reliable measurement. In this study, the sensor module consist of infrared $CO_2$ Sensor, IR Source, pipe and the heater and measuring system has amplifier, A/D converter and microprocessor. And we suggest a method to reduce the error by using the PID temperature control. We use optimum parameters setting of Ziegler & Nichols as well as PID temperature control algorithm for the temperature compensation. In this method, PID optimum parameter is set from dummy time(L) and maximum slope(R). As a result of using this PID temperature control, it is founded that it has the fast response and low steady state error. Therefore, it is certainly proved that this is very suitable algorithm to correct the error on measurement.