In this paper, we propose an evaluation model of systems level using modified eigenvector method and fuzzy subordination relations. This model is desibmed to evaluate the level of system in enterprise. In here. modified eigenvector method is proposed to compute the weights of each criteria in two evaluation group. Also, fuzzy subordination relations is used to evaluate the relationship between the criteria by painvise comparison. In this paper. we can get the evaluated score for the present level of system. This method will help to manage and improve the systems. We show the efficiency of the this method by means of a case study for evaluation problem of environmental management systems.