In order to assure the safety of NPP structures, margin of safety or conservatism is incorporated in each design step. Seismic risk evaluation of NPP structures is performed based on the realistic capacity and response of structure eliminated the safety margin and conservatism. In this study, the comparative study on the various evaluation methods of the inelastic energy absorption capacity was performed. The inelastic energy absorption capacity due to the nonlinear behavior of structures has significant effect on the results of seismic probabilistic risk assessment. And the comparison study of the HCLPF(high confidence of low probability of failure) values according to the inelastic energy absorption factors was performed. As a conclusion, the inelastic energy absorption factor of NPP containment structure is estimated about 1.5~1.75. It is essential to estimate the nonlinear behavior of structure and its ductility factor correctly for the seismic risk assessment.