3GPP proposed f8 and f9 algorithms based on the block cipher KASUMI to provide the data confidentiality and integrity over a radio access link for IMT-2000(W-CDMA). Also 3GPP proposed Milenage algorithm based on the block cipher Rijndael to provide an example set for 3GPP authentication and key generation functions. In order to analyze the security of 3GPP algorithms, we must go ahead an analysis of security of KASUMI and Rijndael. Since S-box is an important point of security of block cipher, in this paper we analyze the S-boxes of KASUMI and Rijndael and compare the S-boxes of KASUMI with the S-box of Rijndael. Although KASUMI S9-box is bad for AC and SAC, we find that AC of KASUMI FI function containing S7-box and S9-box is equal to AC of Rijndael S-box and SAC of KASUMI FI function is better than SAC of Rijndael S-box.