This paper aims to provide a basic framework to make a regional plan for the environment-friendly agriculture. To prepare the regional plan is mandated by the Environment-friendly Agriculture Promotion Act of 1998. Here is proposed the input/output analysis framework, which includes the shifts of fertilizers, herbicides, pesticides, and livestock manures Basically, the discharged amount of polluted elements means the difference between the amount of the elements entered into the crop and livestock sectors and the amount of the elements absorbed or used by the crop and/or livestock. A few suggestions are offered for better regional environment-friendly agricultural plan. The foremost important thing is to establish a data collection system. The "Green Accounting System" is suggested. It is also crucial to create a standard guideline or manual which Provides detailed procedures to follow in making the plan by the local planners. More fundamentally, many experts on the regional planning will be demanded in the near future. Some compound model which links, for instance, the forestry, the livestock sector, and the crop sector, needs to be devised. Finally, it is argued here that more elaborated model will work as an integrated environmental improvement plan which embraces living environment as well as agricultural environment.vironment.