Tool design is introduced in a multi-stage rectangular cup drawing process with the large aspect ratio. Finite element simulation is carried out to investigate deformation mechanisms with the initial tool design. The analysis reveals that the difference of the drawing ratio and the irregular contact condition produces non-uniform metal flow to cause wrinkling and severe extension. For remedy, the modification guideline is proposed in the design of the tool and process. Analysis results confirm that the modified tool design not only improves the quality of a deep-drawn product but also reduces the possibility of failure.