Biochemical responses of rice to the flooding stress with different water turbidities and flooding time were evaluated. About 20% decrease of soluble protein was occurred with flooding stress. The decreasing rate was higher as flooding time and higher turbidity increased. Especially, dramatic decrease of soluble protein content was observed after 36 hrs of flooding. No protein subunit change was found before and after flooding. However, subunit product of 53 Kd increased from the beginning of flooding and subunit of 28 Kd was increased 48 hrs and 54 hrs after flooding. Lipid peroxidation increased about 150% by flooding. There was no significant difference in lipid peroxidation between clear and sub-muddy water, However, the lipid peroxidation was increased up to 180% at 60hrs of flooding. The malondialdehyde content (MDA) was higher in muddy water at the beginning of flooding and increased about 190-200% 36 hrs after flooding. Catalase activity increased with increasing turbidity and flooding time. Forty eight hours of flooding time provided a criteria for dramatic increase of catalase activity. In general, increase of saturated fatty acids and decrease of unsaturated fatty acids occurred with flooding treatment. Among unsaturated fatty acids, monounsaturated increased and polyunsaturated decreased. Double bond index(DBI) decreased as flooding time was extended and turbidity increased.