This paper describes a precise position synchronous control of two axes rotating system using BLDC motors and a cooperative control based on decoupling technique and PI control law. The system is required performances both good speed following and minimum position synchronous errors simultaneously. To accomplish these goals, the three kinds of controllers are designed. At first, the current and speed controller are designed very simply to compensate the influences of disturbances and to follow up speed references quickly. Especially, the two degree of freedom PI controller is used considering both good tracking for speed reference input and quick rejection of disturbances in speed controller. Finally, a position synchronous controller is designed as a simple proportional controller to minimize position synchronous errors. The validity of the proposed method is confirmed through some numerical simulations. Moreover, the results are compared to the conventional master-slave control ones to show the effectiveness of the proposed system.