The effect of chitosan on antibacterial activities of cotton, wool and polyester fibers was investigated by shake flask method. Chitosan was treated in 0.1%, 1% and 2% $NaBO_3$ solution to reduce the molecular weight in 4 steps, wadding of cotton, wool and polyester were treated in 0.1%, 0.3% and 0.5% of chitosan solution which were dissolved in 2% acetic acid aqueous solution. The antibacterial activities of the fiber wadding treated and untreated by chitosan against Escherichia coli, Proteus vulgaris and Stephylococcus aureus were measured by shake flask method. On the untreated waddings, cotton showed better antibacterial activities than wool, but on the treated ones, wool showed better than cotton. The antibacterial activity of polyester was better than that of cotton or wool which preserved before and after the chitosan treatment against the three kinds of bacteria. When the chitosan treated cotton waddings was retreated in NaOH aqueous solution, their bacterial activities decreased. After laundering, the antibacterial activities of the treated cotton and wool waddings kept good, but that of the treated polyester reduced by almost half.