This paper presents the development of development of stabilization and tracking algorithms for a shipboard satellite antenna system. In order to stabilize the satellite antenna system designed in the previous work, a model for each control axis is derived and its parameters are estimated using a genetic algorithm, and the state feedback controller is designed based on the linearized model. Then a tracking algorithm is derived to overcome some drawbacks of the step tracking. The proposed algorithm searches for the best position using gradient-based formulae and signal intensities measured according to a search pattern. The effectiveness of both the stabilization and tracking algorithms is demonstrated through experiment using real-world data.