To investigate the flow characteristics by the water stage variation between stream-aquifer, the new solution of nonlinear Boussinesq equation was derived and extended using the Boltzmann transformation. The soundness of the analytic solution obtained from this study was examined by the comparison with the linearized analytic solution and the numerical solution by finite difference method. And the movement, velocity, flowrate and volume of flow caused by the stage variation of stream and the existence of regional gradient were estimated. This new analytic solution can express the groundwater movement between stream-aquifer. So, it might be helpful to manage water environment.