The hydrodynamic instability of the three-dimensional boundary-layer over a rotating disk has been numerically investigated for these flows; Ro = -1, -0.5, and 0, using linear stability theory. Detailed numerical values of the disturbance wave number. wave frequency. azimuth angle. radius (Reynolds number, Re) and other characteristics have been calculated for the pre-swirl flows. On the basis of Ekman and Karman boundary layer theory, the instability of the pre-swirl flows have been investigated for the unstable criteria. The disturbance will be relatively fast amplified at small fe and within wide bands of wave number compared with previously known Karman boundary-layer results. The flow (Ro =-0.5) is found to be always stable for a disturbance whose dimensionless wave number is greater than 0.9. It has a larger range of unstable interval than Karman boundary layer and can be unstable at smaller Re.