This paper concerns on application of active magnetic bearing(AMB) system to levitate the elevation axis of an electro-optical sight mounted on moving vehicles. In such a system, it is desirable to retain the elevation axis within the predetermined air-gap while the vehicle is moving. An optimal base acceleration feedforward control is proposed to reduce the base motion response. In the consideration of the uncertainty of the system model, a filtered-x least-mean-square(FXLMS) algorithm is used to estimate the frequency response function of the feedforward control which cancels base motions. The frequency response function is fitted to an optimal feedforward control. Experimental results demonstrate that the proposed control reduces the air-gap deviation to 27.7% that by feedback control alone.