IMO NOx levels are generally possible to meet by means of primary on-engine measures. Nevertheless further significant follow-on reductions are likely to require a secondary after-treatment technique. SCR system is currently the only available technology proven at full scale to meet the 90% NOx reduction levels. Accordingly, maybe the use of an SCR system on board ship provides the solution to minimize this primary pollutant without increasing fuel consumption. In order to develop a practical SCR system for marine application on board ship, a primary SCR system using urea was made. The SCR system was set up on the ship. employed a two-stroke diesel engine as a main propulsion. which is a training ship in KMU (Korea Maritime Univ.). The purpose of this paper is to report the results about the basic effects of the above system parameters which is investigated from practical application through its trial use. The degree of NOx removal depends on some parameters. such as the amount of urea solution added, space velocity. reaction gas temperature and activity of catalyst. The preliminary results from trial run are presented.