Multi-level geographic data can be mainpulated by a window query such as a zoom operation. In order to handle multi-level geographic data efficiently, a spatial indexing method supporting a window query is needed. However, the conventional spatial indexing methods are not efficient to access multi-level geographic data quickly. To solve it, other a few spatial indexing methods for multi-level geographic data are known. However these methods do not support all types of multi-level geographic data. This paper presents a new efficient spatial indexing method, the MLR-tree for window query of multi-level geographic data. The MLR-tree offers both high search performance and no data redundancy. Experiments show them. Moreover, the MLR-tree supports all types of multi-level geographic data.