Program Behavior Intrusion Detection Technique analyses system calls that called by daemon program or root authority, constructs profiles, and detectes modificated anomaly intrusions effectively. In this paper, the relation among system calls of processes is represented by bayesian network and Multiple Sequence Alignment. Program behavior profiling by Bayesian Network classifies modified anomaly intrusion behaviors, and detects anomaly behaviors. we had simulation by proposed normal behavior profiling technique using UNM data.