The automatic assembly system of micro optical filter is a key technology in the development of optical modules with high functionality. In order to develop an automatic assembly system of optical fiber and filter, we have firstly developed the system and program capable of characterization of 30${mu}m$-thick film filters as well as conventional optical filters. Moreover, we have carried out the characterization of optical filter using the developed system and program, and compared experimental results with by conventional handwork. The measurement of optical filters using the present system is faster, more precise and more reliable than those based on the conventional handwork.