This paper describes the design of navigation system for an unmanned target drone which is operated by Korean army as for anti-air gun shooting training. Current target drone is operated by pilot control of on-board servo motor via remote control system. Automatic flight control system for the target drone greatly reduces work load of ground pilot and can increase application area of the drone. Most UAVs being operated nowdays use high-priced sensors as AHRS and IMU to measure the attitude, but those are costly. This paper introduces the development of low-cost automatic flight control system with low-cost sensors. The integrated automatic flight control system has been developed by integrating combining power module, switching module, monitoring module and RC receiver as an one module. The performance of navigation for low cost unmanned aerial vehicle, unmanned target drone as our test bed in this paper is verified by both Hardware in the loop simulation(HILS) to test performance of GPS as GPS output frequency high and results of flight test.