In order to quickly respond to the rapidly changing manufacturing environment, it is imperative for the system to have such capabilities as flexibility, adaptability, reusability, etc. One of the promising approaches for new manufacturing paradigm satisfying those capabilities is the fractal manufacturing system (FrMS). The FrMS can be optimized by reorganizing the structure of fractals through the dynamic restructuring process (DRP) to deal with the changes of environment. Through the DRP, the logical connections between fractals and roles of fractals are autonomously changed. To determine an appropriate fractal structure, certain rules are needed to build and evaluate alternative structures for fractals involved in the DRP. In this paper, an algorithm for the DRP-, which is invoked when some equipment are unavailable, is introduced and explained with examples.