Recently, the vibration reduction at a local structure such as compass deck has been continuously requested by ship owner and shipbuilder. Because crews are afflicted with vibration, severe vibration problems even bring about a damage of structure. This study conducted to get an optimized stiffener size of compass deck to reduce the vibration level and decrease the weight of structure in ship. NASTRAN external call type optimization software (OptShip) which makes use of NASTRAN as a solver is used as an optimization tool. The results indicate that the optimum design is promising for real applications.