The purpose if the study is to apply GIS technique to sample area, Choensoo-Bay basin for an efficient and practical coastal zone management if pollution control. The basins, Unit if pollution control, are selected with qualitative analysis using DEM after considered river length, degree and area of basin through channel network analysis. Choensoo-Bay basin is divided with 6 zones to 33 subordinate zones. It is found to be a big difference of pollutant loads in each zone. The pollutant loads use to review for efficient zoning. And also the result apply to measurement of water quality and building for environmental infrastructure.