Laser melting problems with deformed substrates are investigated by axisymmetric numerical simulations. Source-based method is used to solve the energy equation, and the momentum equations are solved in the liquid domain with SIMPLER algorithm. Using a laser beam with a top-hat heat flux distribution, this study is performed to examine the effect of surface deformation, beam power density and surface tension force on the molten pool during laser melting. Surface temperature decreases with increasing surface deformation, while surface velocity increases. It is found that surface deformation, beam power density and surface tension force have a very significant effect on heat transfer and fluid flow during laser melting.