This paper presents optimization of a pneumatic control system whose design parameters have been optimized so that the desired dynamic characteristics of cylinder position was obtained. The pneumatic system is used as transferring and stacking equipment for solid freeform fabrication system which has been widely used in design verification applications. The pneumatic system mainly consists of pneumatic control valves and cylinders. The system was modeled by using several principles for pneumatic components. The system was optimized to obtain dynamic performance with enough damping to reduce cylinder vibration. A fuzzy controller has been applied to fulfill the dynamic performance requirements of the pneumatic system. The simulation results show that the fuzzy controller is more effective than a PD controller.