In this paper, a reconfigurable model following flight control method is proposed based on direct adaptive scheme using parameter estimation. Adaptive control scheme updates the control gains to make the system output follow the reference output even when fault occurs. By adopting the frequency domain parameter estimation method, system changes by the fault can be estimated. Recursive Fourier transformation is used for system identification. Using recursive Fourier transform, the proposed adaptive control algorithm guarantees the system stability and improves the system characteristics. To evaluate the performance of proposed control method, numerical simulations are performed.???