In recent, the marine engine of a large size is being realized a lower speed, longer stroke and a small number of cylinders for the energy saving. Consequently the variation of rotational torque became larger than former days because of the longer delay-time in fuel oil injection process and an increased output per cylinder. It was necessary that algorithms have enough robustness to suppress the variation of the delay-time and the parameter perturbation. This paper shows the structure of hybrid F-NFC against the delay-time and the perturbation of engine parameter as modeling uncertainties, and the design of the robust speed controller by hybrid F-NFC for the engine. And, The Parameter values of linear equation are determined by RC-GA for F-NFS. The hybrid F-NFC is combined the F-NFC and PID controller for filling up each.