This paper outlines the methodology of grid-based water balance for estimating the spatial distribution of recharge, which is applied to Woedo catchment in the northern area of the Jeju Island. The catchment is divided into grids and a daily water balance in each grid is computed for the period of 5 years. Daily rainfall data in each grid is interpolated from the data of 10 rainfall gauging stations. The spatial distributions of parameters such as SCS curve number, soil water retention capacity and crop coefficients are derived from GIS analyses of soil and land use characteristics. The SCS curve number is obtained by calibrating simulated runoffs with respect to the observed runoffs. The results show that the average annual rainfall increases from 1,665 mm/year to 3,382 mm/year in accordance with the topographic elevation, and the average annual recharge varies from 372 mm/year to 2,576 mm/year according to the average annual rainfall increases. Spatial variability of recharge is the highest among the water balance components such as rainfall, direct runoff, evaprotranspiration and recharge because the rate of runoff and evapotranspiration in the area with relatively low rainfall is higher than the other area.