We completed a new cluster system based on WDM by proposing a virtual topology reconfiguration schemes. The key idea of the proposed scheme is to construct a set with the longest chains of requests of connecting nodes which need to be assigned a wavelength. All the sets have no common factor, that is, there is no duplicated link among the requests of connecting. After making the set satisfying this condition, we could assign a wavelength to per corresponding set. We could reconfigure a virtual topology with this scheme collectively. we compared our scheme to existing approaches by the OWns simulation tool. As the results, we gained improved performances, reducing 10% of blocking rate and improving 30% of ADM utilization in terms of the blocking probability and the ADM utilization.