Stored animal manure is considered as a significant agricultural source of methane $(CH_4)$ and nitrous oxide $(N_2O)$ which have 23 and 297 times higher global warming effect when compared to carbon dioxide $(CO_2)$. Uncertainties caused by lack of understanding physical and biochemical environment in stored animal manure and by errors of emission measurement methods, even though many researches measuring $CH_4;and;N_2O$ emissions from stored manure have been conducted for a few decades. In this paper, general information of $CH_4;and;N_2O$ generation and emissions from stored animal manure and the measurement methods for quantifying $CH_4;and;N_2O$ emissions are discussed.