기관회원 [로그인]
소속기관에서 받은 아이디, 비밀번호를 입력해 주세요.
개인회원 [로그인]

비회원 구매시 입력하신 핸드폰번호를 입력해 주세요.
본인 인증 후 구매내역을 확인하실 수 있습니다.

회원가입
서지반출
Pharmacophore Modeling for Protein Tyrosine Phosphatase 1B Inhibitors
[STEP1]서지반출 형식 선택
파일형식
@
서지도구
SNS
기타
[STEP2]서지반출 정보 선택
  • 제목
  • URL
돌아가기
확인
취소
  • Pharmacophore Modeling for Protein Tyrosine Phosphatase 1B Inhibitors
  • Pharmacophore Modeling for Protein Tyrosine Phosphatase 1B Inhibitors
저자명
Bharatham. Kavitha,Bharatham. Nagakumar,Lee. Keun-Woo
간행물명
Archives of pharmacal research : a publication of the Pharmaceutical Society of Korea
권/호정보
2007년|30권 5호|pp.533-542 (10 pages)
발행정보
대한약학회
파일정보
정기간행물|ENG|
PDF텍스트
주제분야
기타
이 논문은 한국과학기술정보연구원과 논문 연계를 통해 무료로 제공되는 원문입니다.
서지반출

기타언어초록

A three dimensional chemical feature based pharmacophore model was developed for the inhibitors of protein tyrosine phosphatase 1B (PTPIB) using the CATALYST software, which would provide useful knowledge for performing virtual screening to identify new inhibitors targeted toward type II diabetes and obesity. A dataset of 27 inhibitors, with diverse structural properties, and activities ranging from 0.026 to 600 ${mu}$M, was selected as a training set. Hypo1, the most reliable quantitative four featured pharmacophore hypothesis, was generated from a training set composed of compounds with two H-bond acceptors, one hydrophobic aromatic and ore ring aromatic features. It has a correlation coefficient, RMSD and cost difference (null cost-total cost) of 0.945, 0.840 and 65.731 , respectively. The best hypothesis (Hypo1) was validated using four different methods. Firstly, a cross validation was performed by randomizing the data using the Caf-Scramble technique. The results confirmed that the pharmacophore models generated from the training set were valid. Secondly, a test set of 281 molecules was scored, with a correlation of 0.882 obtained between the experimental and predicted activities. Hypo1 performed well in correctly discriminating the active and inactive molecules. Thirdly, the model was investigated by mapping on two PTP1B inhibitors identified by different pharmaceutical Companies. The Hypo1 model Correctly Predicted these compounds as being highly active. Finally, decking simulations were performed on few compounds to substantiate the role of the pharmacophore features at the birding site of the protein by analyzing their binding conformations. These multiple validation approaches provided confidence in the utility of this phar-macophore model as a 3D query for virtual screening to retrieve new chemical entities showing potential as potent PTP1B inhibitors.