Pathogenic microbial foodborne disease outbreaks (PMFBDOs) have increased in many countries, the boom in food service establishment is not matched by effective food safety and control. In this study, we investigated the current state and the epidemic aspects of FBDOs in Korea and Japan. In Korea, the average prevalence rate of foodborne disease (FBD) was 15.0 per 100,000 population and cases per outbreak of FBD was 57.0. During the same period in Japan, the prevalence rate showed an average of 24.9, and the cases per outbreak were 16. When both prevalence rate and cases per outbreak were compared, the prevalence rate in Japan was much higher than that in Korea (p<0.01). However, average cases per outbreak of FBD in Japan were much lower than those in Korea (p<0.01). In Korea, outbreaks of FBDs were more common in spring (p<0.01), while in Japan, more frequent in summer and winter (p<0.01). Outbreaks of FBD occurred largely through restaurant and school foods (32.0% and 27.5%) in Korea. In Japan, the proportion of the outbreak cases in the restaurant and home were 23.7% and 12.1%, and cases of unknown causes of FBDs were 48.2%, respectively. Bacteria were the major causes of infection in both countries. The prevalence of PMFBDOs by Salmonella spp. Vibrio parahemolyticus and Staphylococcus aureus were much higher in Korea, while those by Camphylobacter spp. and SRSV were more common in Japan. The causes by virus were more frequent in Japan (13.7%) than in Korea (7.7%). The prevalence of FBDs in Korea and Japan showed characteristic differences, especially in the PMFBDOs due to such factors as geography, climate, culture, diet and food management.