In this paper, we develop a new conversion method for implementing binary ECG(Electrocardiogram) conversion scheme to improve our previous research works that supported the conversion of binary ECG files into HL7 aECG for enhancing interoperability of ECG data. HL7 aECG is a XML-based standard for interoperability of ECG waveform. To improve the performance of ECG data conversion, we utilize a compilation-based ECG conversion method on binary ECG files. Our new method supports both flexibility of BED-based ECG conversion mechanism and the performance of direct conversion mechanism.