This study verified the limitations of commercial GPS data processing software and the applicability on precise positioning through comparing the processing results between Bernese and TGO under various conditions. To achieve the goal, we selected three nationwide station data and two smaller local data to constitute networks. By using Bernese and TGO, those networks are processed through the baseline analysis and the network adjustment. The comparative analysis was carried out, in terms of software, baseline length and network scale, observation duration, and number of fixed points. In the comparison between softwares, the scientific software was excellent in accuracy. It was confirmed that, as GPS-related technology is developed, the performance of the receiver was enhanced. And, in parallel with this, even the functionalities of the commercial software were tremendously enhanced. The difference, however, in result between the scientific and commercial software are still exist even if it is not big. Therefore, this study confirms that the scientific software should be used when the most precise position is necessary to be computed, especially if baseline vectors are big.