The reciprocating type hydrogen compressor has a pulsation due to the reciprocative characteristics which results in noise and vibration. Snubber is installed for the relaxation of pulsation, but it causes reduction of compressor efficiency because of pressure loss. Five types of snubber were modeled for the numerical investigation of the effect of the relative position of inlet and outlet and buffer angle on the pulsation amplitude and pressure loss. MSC/NASTRAN is used as a numerical tool to identify the vibration characteristic of each type. Frequency responses in forced vibration mode are compared for various cases and buffer angles.