This paper suggests a GPS/INS navigation computer architecture that can be applied to small satellites. In order to implement a GPS/INS navigation system on a small satellite, the extreme environment in space such as radiation, micro-gravity, vacuum, etc. must be considered. In addition, a real-time processing ability is required for the GPS/INS navigation system since the formation flying of multiple small satellites is the ultimate goal. The developed navigation electronics utilizes a PowerPC-type MPC860T that has space environment heritage, and a pair of Atmega128s that has been implemented in KAUSAT-2 and has completed the space environment verification tests. The navigation algorithm is designed to work in VxWorks environment, ported in MPC860T.