Virtual construction methodology enables to construct project facility from design phase to construction phase in 3D virtual environment. It is a technique that can solve problems of construction in virtual construction process. This study suggests some methodologies of virtual construction and developed a system for a railway station in Honam express railway project based on suggested methodologies. This study developed layout review and layer simulation functions. Those functions can improve the effectiveness of 3D simulation and the virtual construction system can be used as a verification tool for construction process of various construction projects.