Basic objective in cluster analysis is to discover natural groupings of items or variables. In general, clustering is conducted based on some similarity (or dissimilarity) matrix or the original input text data. Various measures of similarities (or dissimilarities) between objects (or variables) are developed. We introduce a real application problem of clustering procedure in SPSS when the distance matrix of the objects (or variables) is only given as an input data. It will be very helpful for the cluster analysis of huge data set which leads the size of the proximity matrix greater than 1000, particularly. Syntax command for matrix input data in SPSS for clustering is given with numerical examples.