Document clustering is an important method for document analysis and is used in many different information retrieval applications. This paper proposes a new document clustering model using the clustering method based NMF(non-negative matrix factorization) and refinement of documents in cluster by using coherence of cluster. The proposed method can improve the quality of document clustering because the re-assigned documents in cluster by using coherence of cluster based similarity between documents, the semantic feature matrix and the semantic variable matrix, which is used in document clustering, can represent an inherent structure of document set more well. The experimental results demonstrate appling the proposed method to document clustering methods achieves better performance than documents clustering methods.