Empirical mode decomposition (EMD) is new time-frequency analysis method to decompose the signal adaptively and efficiently. The key idea of EMD is to decompose the signal into a set of functions defined by the signal itself, named Intrinsic Mode Functions (IMFs), which preserve the inherent properties of the original signal. Since the decomposition is based on the local time scale of the signal, it is not only applicable to nonlinear and non-stationary processes but also useful in biomedical signals like electrocardiogram (ECG). Traditional low-pass filter uses fourier transform to analysis signal in frequency domain, but EMD is filtered to maintain signal properties in time domain. This paper performed signal decomposition and filtering for noisy ECGs using EMD method. The proposed method is presented and compared with traditional low-pass filter by two performance indices. Our results show effectiveness for enhancement of the noisy ECG waveforms.