For reliable water quality simulation by semi distributed model, accurate daily runoff simulation should have preceded. In this study, newly developed channel routing method which is nonlinear storage method is combination of Muskingum routing method and variable storage routing method and temporally weighted average curve number method were applied for effect analysis of water quality simulation. Developed modules, which are added in SWAT models and simulation, were conducted for the Chungju dam watershed. The simulation result by each module applied effect. As a result of analysis contribute water quality modeling, nonlinear storage method is more effective than temporally weighted average curve number method. Nutrient loading discharge was affected by development of runoff delaying from improvement of channel routing, because of characteristics of nonpoint source pollution.