Today, it is difficult to re-use and share spatial information, because of the explosive growth of heterogeneous information and specific characters of spatial information accumulated by diverse local agency. A spatial analysis of subsurface spatial informa-tion, one of the National Spatial Data Infrastructure, needs related spatial information such as, topographical map, geologic map, underground facility map, etc. However, current methods using standard format or spatial datawarehouse cannot consider a se-mantic hetergenity. In this paper, the layered ontology model which consists of generic concept, measuremnt scale, spatial model, and subsurface spatial information has developed. Also, the current ontology building method pertained to human experts is a expensive and time-consuming process. We have developed the MDA-based metamodel(UML Profile) of ontology that can be a easy under-standing and flexiblity of environment change. The semantic quality of devleoped ontology model has evaluated by reasoning engine, Pellet. We expect to improve a semantic sharing, and strengthen capacities for developing GIS experts system using knowledge representation ability of ontology.