The surge control system in unmanned turbojet engine must be capable of accounting uncertainties from engine transient conditions, random fluctuations of key parameters such as air pressure and fuel flow and engine modeling errors. In this paper, taking into consideration of its effectiveness as well as system stability, a fuzzy PI controller is proposed. The role of the fuzzy PI controller is to stabilize the unmanned aircraft upon occurring unexpected engine surge. The proposed control scheme is proved by computer simulation using a linear engine model. The simulation results on the state space model of a small turbojet engine illustrate the proposed control system achieves the desired performance.