Since the school buildings are generally used as public shelters when the natural disasters such as flood and earthquake occur, it must be designed to show enough structural performance when subject to earthquake. Major failure mode of the school buildings observed in past earthquakes were shear failure of column of which length is shortened by infilled masonry blocks. In this study, the seismic risk of the reinforced concrete school building structure was evaluated by using the seismic performance evaluation methods of low-story RC structures developed in Japan and the required seismic performance index which is obtained according to the KBC2008 seismic hazard map and soil types. In this paper, the seismic performance of the school building is evaluated by considering this short-column effects, building shape and deterioration.