Typoon Maemi landed on the southern coast of Korean Peninsula at 21:00, September 12, 2003 with a central pressure of 950 hPa. A three dimensional (3D) inundation model was established to calculate the storm surge and flooded area due to Typoon Maemi. A field survey of storm surge traces in Masan City was carried out to evaluate the inundation water depth. Hydromet-Rankin Vortex model was used to calculate the atmospheric pressure and the surface wind fields. The inundation area, storm surge and typoon-induced current were calculated using the 3D model. The peak of computed storm surge in Masan Port using the 3D model was 238 cm, and the observed peak was 230 cm. The simulated storm surge and the inundation area showed good agreement with field survey data. The comparison of the 3D and the two dimensional (2D) models of storm surge was carried out, and the 3D model was more accurate. The computed typoon-induced currents in the surface layer of Masan Bay went into the inner bay with 30~60 cm/s, while the currents in the bottom layer flowed out with 20~40 cm/s.