This study aims at investigating the effect of the baffle height on the liquid sloshing in the three-dimensional (3D) rectangular tank. In order to simulate the 3D incompressible viscous two-phase flow in the 3D tank with partially filled liquid, the present study has adopted the volume of fluid (VOF) method based on the finite-volume method which has been well verified by comparing with the results of the relevant previous researches. The ratio of the baffle height ($h_B$) to filling level (h) has been changed in the range of $0{leq}h_B/h{leq}1.2$ to observe the effect on the impact loads on the side wall and free surface behavior. Generally, as baffle height increases, the impact pressure on the wall decreases and the deformation of free surface becomes weaker. However it seemed that a critical ratio of the baffle height existed to reveal the lowest impact pressure on the wall. Consequently, $h_B/h=0.8$ among $h_B/hs$ considered in the study showed the lowest impact pressure.