The changes of magnetic flux density distribution and the degree of magnetic anomaly on the ground surface by underground fracture zones and empty spaces had been investigated through the variations of the measuring heights. The magnetic flux density distributions were monitored for the ground surfaces of fracture zones, empty spaces and tunnels by fluxgate-type magnetometer. The fracture zones showed the magnetic anomaly with (+) and (-) peak-pairs in the magnetic flux distribution measured at 0.15 m height from the ground surface, and this anomaly disappeared at the height of 1.15 m. The underground empty spaces and tunnels showed the decrease of magnetic flux densities, where the degree of this density decrease diminished with the increase of the underground depth. And, the existence and size of underground empty spaces, such as tunnels and sink holes, could be monitored by the phenomena of this decreasing flux density.